Skip to content

Console Output

+ HOME=/var/lib/jenkins1/ws/OMSens_master python3 setup.py install --user
running install
running bdist_egg
running egg_info
creating OMSens.egg-info
writing OMSens.egg-info/PKG-INFO
writing dependency_links to OMSens.egg-info/dependency_links.txt
writing requirements to OMSens.egg-info/requires.txt
writing top-level names to OMSens.egg-info/top_level.txt
writing manifest file 'OMSens.egg-info/SOURCES.txt'
reading manifest file 'OMSens.egg-info/SOURCES.txt'
writing manifest file 'OMSens.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
warning: install_lib: 'build/lib' does not exist -- no Python modules to install

creating build
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying OMSens.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying OMSens.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying OMSens.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying OMSens.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying OMSens.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
zip_safe flag not set; analyzing archive contents...
creating dist
creating 'dist/OMSens-1.0.0-py3.6.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing OMSens-1.0.0-py3.6.egg
Copying OMSens-1.0.0-py3.6.egg to /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages
Adding OMSens 1.0.0 to easy-install.pth file

Installed /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/OMSens-1.0.0-py3.6.egg
Processing dependencies for OMSens==1.0.0
Searching for pandas==1.1.3
Reading https://pypi.org/simple/pandas/
Downloading https://files.pythonhosted.org/packages/a2/21/e10d65222d19a2537e3eb0df306686a9eabd08b3c98dd120e43720bf802d/pandas-1.1.3-cp36-cp36m-manylinux1_x86_64.whl#sha256=ca31ac8578d48da354cf66a473d4d5ff99277ca71d321dc7ea4e6fad3c6bb0fd
Best match: pandas 1.1.3
Processing pandas-1.1.3-cp36-cp36m-manylinux1_x86_64.whl
Installing pandas-1.1.3-cp36-cp36m-manylinux1_x86_64.whl to /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages
Adding pandas 1.1.3 to easy-install.pth file

Installed /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/pandas-1.1.3-py3.6-linux-x86_64.egg
Searching for matplotlib
Reading https://pypi.org/simple/matplotlib/
Downloading https://files.pythonhosted.org/packages/d2/43/2bd63467490036697e7be71444fafc7b236923d614d4521979a200c6b559/matplotlib-3.3.3-cp36-cp36m-manylinux1_x86_64.whl#sha256=9b03722c89a43a61d4d148acfc89ec5bb54cd0fd1539df25b10eb9c5fa6c393a
Best match: matplotlib 3.3.3
Processing matplotlib-3.3.3-cp36-cp36m-manylinux1_x86_64.whl
Installing matplotlib-3.3.3-cp36-cp36m-manylinux1_x86_64.whl to /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages
Adding matplotlib 3.3.3 to easy-install.pth file

Installed /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/matplotlib-3.3.3-py3.6-linux-x86_64.egg
Searching for python-dateutil>=2.7.3
Reading https://pypi.org/simple/python-dateutil/
Downloading https://files.pythonhosted.org/packages/d4/70/d60450c3dd48ef87586924207ae8907090de0b306af2bce5d134d78615cb/python_dateutil-2.8.1-py2.py3-none-any.whl#sha256=75bb3f31ea686f1197762692a9ee6a7550b59fc6ca3a1f4b5d7e32fb98e2da2a
Best match: python-dateutil 2.8.1
Processing python_dateutil-2.8.1-py2.py3-none-any.whl
Installing python_dateutil-2.8.1-py2.py3-none-any.whl to /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages
Adding python-dateutil 2.8.1 to easy-install.pth file

Installed /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/python_dateutil-2.8.1-py3.6.egg
Searching for pillow>=6.2.0
Reading https://pypi.org/simple/pillow/
Downloading https://files.pythonhosted.org/packages/5f/19/d4c25111d36163698396f93c363114cf1cddbacb24744f6612f25b6aa3d0/Pillow-8.0.1-cp36-cp36m-manylinux1_x86_64.whl#sha256=6b4a8fd632b4ebee28282a9fef4c341835a1aa8671e2770b6f89adc8e8c2703c
Best match: Pillow 8.0.1
Processing Pillow-8.0.1-cp36-cp36m-manylinux1_x86_64.whl
Installing Pillow-8.0.1-cp36-cp36m-manylinux1_x86_64.whl to /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages
Adding Pillow 8.0.1 to easy-install.pth file

Installed /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/Pillow-8.0.1-py3.6-linux-x86_64.egg
Searching for kiwisolver>=1.0.1
Reading https://pypi.org/simple/kiwisolver/
Downloading https://files.pythonhosted.org/packages/a7/1b/cbd8ae738719b5f41592a12057ef5442e2ed5f5cb5451f8fc7e9f8875a1a/kiwisolver-1.3.1-cp36-cp36m-manylinux1_x86_64.whl#sha256=5a7a7dbff17e66fac9142ae2ecafb719393aaee6a3768c9de2fd425c63b53e21
Best match: kiwisolver 1.3.1
Processing kiwisolver-1.3.1-cp36-cp36m-manylinux1_x86_64.whl
Installing kiwisolver-1.3.1-cp36-cp36m-manylinux1_x86_64.whl to /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages
Adding kiwisolver 1.3.1 to easy-install.pth file

Installed /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/kiwisolver-1.3.1-py3.6-linux-x86_64.egg
Searching for cycler>=0.10
Reading https://pypi.org/simple/cycler/
Downloading https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl#sha256=1d8a5ae1ff6c5cf9b93e8811e581232ad8920aeec647c37316ceac982b08cb2d
Best match: cycler 0.10.0
Processing cycler-0.10.0-py2.py3-none-any.whl
Installing cycler-0.10.0-py2.py3-none-any.whl to /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages
Adding cycler 0.10.0 to easy-install.pth file

Installed /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/cycler-0.10.0-py3.6.egg
Searching for numpy==1.19.1
Best match: numpy 1.19.1
Adding numpy 1.19.1 to easy-install.pth file
Installing f2py script to /var/lib/jenkins1/ws/OMSens_master/.local/bin
Installing f2py3 script to /var/lib/jenkins1/ws/OMSens_master/.local/bin
Installing f2py3.6 script to /var/lib/jenkins1/ws/OMSens_master/.local/bin

Using /usr/local/lib/python3.6/dist-packages
Searching for pytest==6.1.2
Best match: pytest 6.1.2
Adding pytest 6.1.2 to easy-install.pth file
Installing py.test script to /var/lib/jenkins1/ws/OMSens_master/.local/bin
Installing pytest script to /var/lib/jenkins1/ws/OMSens_master/.local/bin

Using /usr/local/lib/python3.6/dist-packages
Searching for six==1.14.0
Best match: six 1.14.0
Adding six 1.14.0 to easy-install.pth file

Using /usr/local/lib/python3.6/dist-packages
Searching for pytz==2019.3
Best match: pytz 2019.3
Adding pytz 2019.3 to easy-install.pth file

Using /usr/local/lib/python3.6/dist-packages
Searching for pyparsing==2.4.7
Best match: pyparsing 2.4.7
Adding pyparsing 2.4.7 to easy-install.pth file

Using /usr/local/lib/python3.6/dist-packages
Searching for attrs==20.3.0
Best match: attrs 20.3.0
Adding attrs 20.3.0 to easy-install.pth file

Using /usr/local/lib/python3.6/dist-packages
Searching for iniconfig==1.1.1
Best match: iniconfig 1.1.1
Adding iniconfig 1.1.1 to easy-install.pth file

Using /usr/local/lib/python3.6/dist-packages
Searching for packaging==20.3
Best match: packaging 20.3
Adding packaging 20.3 to easy-install.pth file

Using /usr/local/lib/python3.6/dist-packages
Searching for toml==0.10.2
Best match: toml 0.10.2
Adding toml 0.10.2 to easy-install.pth file

Using /usr/local/lib/python3.6/dist-packages
Searching for py==1.9.0
Best match: py 1.9.0
Adding py 1.9.0 to easy-install.pth file

Using /usr/local/lib/python3.6/dist-packages
Searching for pluggy==0.13.1
Best match: pluggy 0.13.1
Adding pluggy 0.13.1 to easy-install.pth file

Using /usr/local/lib/python3.6/dist-packages
Searching for importlib-metadata==3.1.1
Best match: importlib-metadata 3.1.1
Adding importlib-metadata 3.1.1 to easy-install.pth file

Using /usr/local/lib/python3.6/dist-packages
Searching for zipp==3.4.0
Best match: zipp 3.4.0
Adding zipp 3.4.0 to easy-install.pth file

Using /usr/local/lib/python3.6/dist-packages
Finished processing dependencies for OMSens==1.0.0
Rut.for:760:72:

               if(mod(i,20).eq.0)pause
                                                                        1
Warning: Deleted feature: PAUSE statement at (1)
Rut.for:764:72:

       pause
                                                                        1
Warning: Deleted feature: PAUSE statement at (1)
Rut.for:788:72:

       pause
                                                                        1
Warning: Deleted feature: PAUSE statement at (1)
Rut.for:1073:72:

 10    assign 30 to next
                                                                        1
Warning: Deleted feature: ASSIGN statement at (1)
Rut.for:1077:16:

 20    go to next, (30,40,70,80)
                1
Warning: Deleted feature: Assigned GOTO statement at (1)
Rut.for:1079:72:

       assign 40 to next
                                                                        1
Warning: Deleted feature: ASSIGN statement at (1)
Rut.for:1084:72:

       assign 70 to next
                                                                        1
Warning: Deleted feature: ASSIGN statement at (1)
Rut.for:1087:72:

       assign 80 to next
                                                                        1
Warning: Deleted feature: ASSIGN statement at (1)
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "curvif_simplified" sources
creating /tmp/tmp4sbug9e4/src.linux-x86_64-3.6
f2py options: []
f2py: curvif_simplified.pyf
Reading fortran codes...
	Reading file 'curvif_simplified.pyf' (format:free)
Post-processing...
	Block: __user__routines
			Block: obj_func
	Block: curvif_simplified
			Block: curvif_simplified
In: curvif_simplified.pyf:curvif_simplified:unknown_interface:curvif_simplified
get_useparameters: no module __user__routines info used by curvif_simplified
Post-processing (stage 2)...
Building modules...
	Constructing call-back function "cb_obj_func_in___user__routines"
	  def obj_func(x,[n]): return f
	Building module "curvif_simplified"...
		Constructing wrapper function "curvif_simplified"...
		  x_opt,f_opt = curvif_simplified(x0,obj_func,lower_bounds,upper_bounds,epsilon,[n,obj_func_extra_args])
	Wrote C/API module "curvif_simplified" to file "/tmp/tmp4sbug9e4/src.linux-x86_64-3.6/curvif_simplifiedmodule.c"
  adding '/tmp/tmp4sbug9e4/src.linux-x86_64-3.6/fortranobject.c' to sources.
  adding '/tmp/tmp4sbug9e4/src.linux-x86_64-3.6' to include_dirs.
copying /usr/local/lib/python3.6/dist-packages/numpy/f2py/src/fortranobject.c -> /tmp/tmp4sbug9e4/src.linux-x86_64-3.6
copying /usr/local/lib/python3.6/dist-packages/numpy/f2py/src/fortranobject.h -> /tmp/tmp4sbug9e4/src.linux-x86_64-3.6
build_src: building npy-pkg config files
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using build_ext
building 'curvif_simplified' extension
compiling C sources
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC

creating /tmp/tmp4sbug9e4/tmp
creating /tmp/tmp4sbug9e4/tmp/tmp4sbug9e4
creating /tmp/tmp4sbug9e4/tmp/tmp4sbug9e4/src.linux-x86_64-3.6
compile options: '-I. -I/tmp/tmp4sbug9e4/src.linux-x86_64-3.6 -I/usr/local/lib/python3.6/dist-packages/numpy/core/include -I/usr/include/python3.6m -c'
x86_64-linux-gnu-gcc: /tmp/tmp4sbug9e4/src.linux-x86_64-3.6/curvif_simplifiedmodule.c
x86_64-linux-gnu-gcc: /tmp/tmp4sbug9e4/src.linux-x86_64-3.6/fortranobject.c
In file included from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
                 from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from /tmp/tmp4sbug9e4/src.linux-x86_64-3.6/fortranobject.h:13,
                 from /tmp/tmp4sbug9e4/src.linux-x86_64-3.6/fortranobject.c:2:
/usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
In file included from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
                 from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from /tmp/tmp4sbug9e4/src.linux-x86_64-3.6/fortranobject.h:13,
                 from /tmp/tmp4sbug9e4/src.linux-x86_64-3.6/curvif_simplifiedmodule.c:16:
/usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
/tmp/tmp4sbug9e4/src.linux-x86_64-3.6/curvif_simplifiedmodule.c: In function 'cb_obj_func_in___user__routines':
/tmp/tmp4sbug9e4/src.linux-x86_64-3.6/curvif_simplifiedmodule.c:361:10: warning: unused variable 'f' [-Wunused-variable]
   double f=(*f_cb_capi);
          ^
At top level:
/tmp/tmp4sbug9e4/src.linux-x86_64-3.6/curvif_simplifiedmodule.c:128:12: warning: 'f2py_size' defined but not used [-Wunused-function]
 static int f2py_size(PyArrayObject* var, ...)
            ^~~~~~~~~
compiling Fortran sources
Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
compile options: '-I. -I/tmp/tmp4sbug9e4/src.linux-x86_64-3.6 -I/usr/local/lib/python3.6/dist-packages/numpy/core/include -I/usr/include/python3.6m -c'
gfortran:f90: Curvif_simplified.f90
/usr/bin/gfortran -Wall -g -Wall -g -shared /tmp/tmp4sbug9e4/tmp/tmp4sbug9e4/src.linux-x86_64-3.6/curvif_simplifiedmodule.o /tmp/tmp4sbug9e4/tmp/tmp4sbug9e4/src.linux-x86_64-3.6/fortranobject.o /tmp/tmp4sbug9e4/Curvif_simplified.o Curvif.o Rutf.o Rut.o -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7 -lgfortran -o ./curvif_simplified.cpython-36m-x86_64-linux-gnu.so
Removing build directory /tmp/tmp4sbug9e4
CURVI files compiled.
Generated CURVIF python binary.