+ HOME=/var/lib/jenkins1/ws/OMSens_master python3 setup.py install --user
running install
running bdist_egg
running egg_info
creating OMSens.egg-info
writing OMSens.egg-info/PKG-INFO
writing dependency_links to OMSens.egg-info/dependency_links.txt
writing requirements to OMSens.egg-info/requires.txt
writing top-level names to OMSens.egg-info/top_level.txt
writing manifest file 'OMSens.egg-info/SOURCES.txt'
reading manifest file 'OMSens.egg-info/SOURCES.txt'
writing manifest file 'OMSens.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
warning: install_lib: 'build/lib' does not exist -- no Python modules to install
creating build
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying OMSens.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying OMSens.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying OMSens.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying OMSens.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying OMSens.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
zip_safe flag not set; analyzing archive contents...
creating dist
creating 'dist/OMSens-1.0.0-py3.6.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing OMSens-1.0.0-py3.6.egg
Copying OMSens-1.0.0-py3.6.egg to /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages
Adding OMSens 1.0.0 to easy-install.pth file
Installed /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/OMSens-1.0.0-py3.6.egg
Processing dependencies for OMSens==1.0.0
Searching for pandas==1.1.3
Reading https://pypi.org/simple/pandas/
Downloading https://files.pythonhosted.org/packages/a2/21/e10d65222d19a2537e3eb0df306686a9eabd08b3c98dd120e43720bf802d/pandas-1.1.3-cp36-cp36m-manylinux1_x86_64.whl#sha256=ca31ac8578d48da354cf66a473d4d5ff99277ca71d321dc7ea4e6fad3c6bb0fd
Best match: pandas 1.1.3
Processing pandas-1.1.3-cp36-cp36m-manylinux1_x86_64.whl
Installing pandas-1.1.3-cp36-cp36m-manylinux1_x86_64.whl to /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages
Adding pandas 1.1.3 to easy-install.pth file
Installed /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/pandas-1.1.3-py3.6-linux-x86_64.egg
Searching for Pillow==9.0.1
Reading https://pypi.org/simple/Pillow/
Downloading https://files.pythonhosted.org/packages/03/a3/f61a9a7ff7969cdef2a6e0383a346eb327495d20d25a2de5a088dbb543a6/Pillow-9.0.1.tar.gz#sha256=6c8bc8238a7dfdaf7a75f5ec5a663f4173f8c367e5a39f87e720495e1eed75fa
Best match: Pillow 9.0.1
Processing Pillow-9.0.1.tar.gz
Writing /tmp/easy_install-dttmmi44/Pillow-9.0.1/setup.cfg
Running Pillow-9.0.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-dttmmi44/Pillow-9.0.1/egg-dist-tmp-3ojjt52p
warning: no files found matching '*.c'
warning: no files found matching '*.h'
warning: no files found matching '*.sh'
warning: no previously-included files found matching '.appveyor.yml'
warning: no previously-included files found matching '.clang-format'
warning: no previously-included files found matching '.coveragerc'
warning: no previously-included files found matching '.editorconfig'
warning: no previously-included files found matching '.readthedocs.yml'
warning: no previously-included files found matching 'codecov.yml'
warning: no previously-included files matching '.git*' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
no previously-included directories found matching '.ci'
--------------------------------------------------------------------
PIL SETUP SUMMARY
--------------------------------------------------------------------
version Pillow 9.0.1
platform linux 3.6.9 (default, Apr 18 2020, 01:56:04)
[GCC 8.4.0]
--------------------------------------------------------------------
--- JPEG support available
*** OPENJPEG (JPEG2000) support not available
--- ZLIB (PNG/ZIP) support available
*** LIBIMAGEQUANT support not available
*** LIBTIFF support not available
*** FREETYPE2 support not available
*** RAQM (Text shaping) support not available
*** LITTLECMS2 support not available
*** WEBP support not available
*** WEBPMUX support not available
--- XCB (X protocol) support available
--------------------------------------------------------------------
To add a missing option, make sure you have the required
library and headers.
See https://pillow.readthedocs.io/en/latest/installation.html#building-from-source
To check the build, run the selftest.py script.
Moving Pillow-9.0.1-py3.6-linux-x86_64.egg to /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages
Adding Pillow 9.0.1 to easy-install.pth file
Installed /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/Pillow-9.0.1-py3.6-linux-x86_64.egg
Searching for kiwisolver==1.3.2
Reading https://pypi.org/simple/kiwisolver/
Downloading https://files.pythonhosted.org/packages/8e/87/259fde8cf07d06677f0a749cb157d079ebd00d40fe52faaab1a882a66159/kiwisolver-1.3.2.tar.gz#sha256=fc4453705b81d03568d5b808ad8f09c77c47534f6ac2e72e733f9ca4714aa75c
Best match: kiwisolver 1.3.2
Processing kiwisolver-1.3.2.tar.gz
Writing /tmp/easy_install-td58slx3/kiwisolver-1.3.2/setup.cfg
Running kiwisolver-1.3.2/setup.py -q bdist_egg --dist-dir /tmp/easy_install-td58slx3/kiwisolver-1.3.2/egg-dist-tmp-1785uo20
warning: no files found matching '*.png' under directory 'docs/source'
warning: manifest_maker: MANIFEST.in, line 11: unknown action 'recursive'
warning: manifest_maker: MANIFEST.in, line 12: unknown action 'recursive'
no previously-included directories found matching '.git'
no previously-included directories found matching 'dist'
no previously-included directories found matching 'build'
no previously-included directories found matching 'docs/build'
zip_safe flag not set; analyzing archive contents...
__pycache__.kiwisolver.cpython-36: module references __file__
creating /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/kiwisolver-1.3.2-py3.6-linux-x86_64.egg
Extracting kiwisolver-1.3.2-py3.6-linux-x86_64.egg to /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages
Adding kiwisolver 1.3.2 to easy-install.pth file
Installed /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/kiwisolver-1.3.2-py3.6-linux-x86_64.egg
Searching for matplotlib==3.3
Reading https://pypi.org/simple/matplotlib/
Downloading https://files.pythonhosted.org/packages/93/ae/81b1c98ae97350711adb021ee12ea678b37f608ec2faa35c3a7db11795fa/matplotlib-3.3.0-1-cp36-cp36m-manylinux1_x86_64.whl#sha256=f9753c6292d5a1fe46828feb38d1de1820e3ea109a5fea0b6ea1dca6e9d0b220
Best match: matplotlib 3.3.0
Processing matplotlib-3.3.0-1-cp36-cp36m-manylinux1_x86_64.whl
Installing matplotlib-3.3.0-1-cp36-cp36m-manylinux1_x86_64.whl to /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages
Adding matplotlib 3.3.0 to easy-install.pth file
Installed /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/matplotlib-3.3.0-py3.6-linux-x86_64.egg
Searching for python-dateutil>=2.7.3
Reading https://pypi.org/simple/python-dateutil/
Downloading https://files.pythonhosted.org/packages/36/7a/87837f39d0296e723bb9b62bbb257d0355c7f6128853c78955f57342a56d/python_dateutil-2.8.2-py2.py3-none-any.whl#sha256=961d03dc3453ebbc59dbdea9e4e11c5651520a876d0f4db161e8674aae935da9
Best match: python-dateutil 2.8.2
Processing python_dateutil-2.8.2-py2.py3-none-any.whl
Installing python_dateutil-2.8.2-py2.py3-none-any.whl to /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages
Adding python-dateutil 2.8.2 to easy-install.pth file
Installed /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/python_dateutil-2.8.2-py3.6.egg
Searching for cycler>=0.10
Reading https://pypi.org/simple/cycler/
Downloading https://files.pythonhosted.org/packages/5c/f9/695d6bedebd747e5eb0fe8fad57b72fdf25411273a39791cde838d5a8f51/cycler-0.11.0-py3-none-any.whl#sha256=3a27e95f763a428a739d2add979fa7494c912a32c17c4c38c4d5f082cad165a3
Best match: cycler 0.11.0
Processing cycler-0.11.0-py3-none-any.whl
Installing cycler-0.11.0-py3-none-any.whl to /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages
Adding cycler 0.11.0 to easy-install.pth file
Installed /var/lib/jenkins1/ws/OMSens_master/.local/lib/python3.6/site-packages/cycler-0.11.0-py3.6.egg
Searching for numpy==1.19.1
Best match: numpy 1.19.1
Adding numpy 1.19.1 to easy-install.pth file
Installing f2py script to /var/lib/jenkins1/ws/OMSens_master/.local/bin
Installing f2py3 script to /var/lib/jenkins1/ws/OMSens_master/.local/bin
Installing f2py3.6 script to /var/lib/jenkins1/ws/OMSens_master/.local/bin
Using /usr/local/lib/python3.6/dist-packages
Searching for pytest==7.0.1
Best match: pytest 7.0.1
Adding pytest 7.0.1 to easy-install.pth file
Installing py.test script to /var/lib/jenkins1/ws/OMSens_master/.local/bin
Installing pytest script to /var/lib/jenkins1/ws/OMSens_master/.local/bin
Using /usr/local/lib/python3.6/dist-packages
Searching for six==1.14.0
Best match: six 1.14.0
Adding six 1.14.0 to easy-install.pth file
Using /usr/local/lib/python3.6/dist-packages
Searching for pytz==2019.3
Best match: pytz 2019.3
Adding pytz 2019.3 to easy-install.pth file
Using /usr/local/lib/python3.6/dist-packages
Searching for pyparsing==2.4.7
Best match: pyparsing 2.4.7
Adding pyparsing 2.4.7 to easy-install.pth file
Using /usr/local/lib/python3.6/dist-packages
Searching for tomli==1.2.3
Best match: tomli 1.2.3
Adding tomli 1.2.3 to easy-install.pth file
Using /usr/local/lib/python3.6/dist-packages
Searching for pluggy==1.0.0
Best match: pluggy 1.0.0
Adding pluggy 1.0.0 to easy-install.pth file
Using /usr/local/lib/python3.6/dist-packages
Searching for attrs==22.2.0
Best match: attrs 22.2.0
Adding attrs 22.2.0 to easy-install.pth file
Using /usr/local/lib/python3.6/dist-packages
Searching for packaging==20.3
Best match: packaging 20.3
Adding packaging 20.3 to easy-install.pth file
Using /usr/local/lib/python3.6/dist-packages
Searching for iniconfig==1.1.1
Best match: iniconfig 1.1.1
Adding iniconfig 1.1.1 to easy-install.pth file
Using /usr/local/lib/python3.6/dist-packages
Searching for importlib-metadata==4.8.3
Best match: importlib-metadata 4.8.3
Adding importlib-metadata 4.8.3 to easy-install.pth file
Using /usr/local/lib/python3.6/dist-packages
Searching for py==1.11.0
Best match: py 1.11.0
Adding py 1.11.0 to easy-install.pth file
Using /usr/local/lib/python3.6/dist-packages
Searching for typing-extensions==4.1.1
Best match: typing-extensions 4.1.1
Adding typing-extensions 4.1.1 to easy-install.pth file
Using /usr/local/lib/python3.6/dist-packages
Searching for zipp==3.6.0
Best match: zipp 3.6.0
Adding zipp 3.6.0 to easy-install.pth file
Using /usr/local/lib/python3.6/dist-packages
Finished processing dependencies for OMSens==1.0.0
Rut.for:760:72:
if(mod(i,20).eq.0)pause
1
Warning: Deleted feature: PAUSE statement at (1)
Rut.for:764:72:
pause
1
Warning: Deleted feature: PAUSE statement at (1)
Rut.for:788:72:
pause
1
Warning: Deleted feature: PAUSE statement at (1)
Rut.for:1073:72:
10 assign 30 to next
1
Warning: Deleted feature: ASSIGN statement at (1)
Rut.for:1077:16:
20 go to next, (30,40,70,80)
1
Warning: Deleted feature: Assigned GOTO statement at (1)
Rut.for:1079:72:
assign 40 to next
1
Warning: Deleted feature: ASSIGN statement at (1)
Rut.for:1084:72:
assign 70 to next
1
Warning: Deleted feature: ASSIGN statement at (1)
Rut.for:1087:72:
assign 80 to next
1
Warning: Deleted feature: ASSIGN statement at (1)
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "curvif_simplified" sources
creating /tmp/tmpkxb53qt9/src.linux-x86_64-3.6
f2py options: []
f2py: curvif_simplified.pyf
Reading fortran codes...
Reading file 'curvif_simplified.pyf' (format:free)
Post-processing...
Block: __user__routines
Block: obj_func
Block: curvif_simplified
Block: curvif_simplified
In: curvif_simplified.pyf:curvif_simplified:unknown_interface:curvif_simplified
get_useparameters: no module __user__routines info used by curvif_simplified
Post-processing (stage 2)...
Building modules...
Constructing call-back function "cb_obj_func_in___user__routines"
def obj_func(x,[n]): return f
Building module "curvif_simplified"...
Constructing wrapper function "curvif_simplified"...
x_opt,f_opt = curvif_simplified(x0,obj_func,lower_bounds,upper_bounds,epsilon,[n,obj_func_extra_args])
Wrote C/API module "curvif_simplified" to file "/tmp/tmpkxb53qt9/src.linux-x86_64-3.6/curvif_simplifiedmodule.c"
adding '/tmp/tmpkxb53qt9/src.linux-x86_64-3.6/fortranobject.c' to sources.
adding '/tmp/tmpkxb53qt9/src.linux-x86_64-3.6' to include_dirs.
copying /usr/local/lib/python3.6/dist-packages/numpy/f2py/src/fortranobject.c -> /tmp/tmpkxb53qt9/src.linux-x86_64-3.6
copying /usr/local/lib/python3.6/dist-packages/numpy/f2py/src/fortranobject.h -> /tmp/tmpkxb53qt9/src.linux-x86_64-3.6
build_src: building npy-pkg config files
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
customize Gnu95FCompiler
Found executable /usr/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using build_ext
building 'curvif_simplified' extension
compiling C sources
C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating /tmp/tmpkxb53qt9/tmp
creating /tmp/tmpkxb53qt9/tmp/tmpkxb53qt9
creating /tmp/tmpkxb53qt9/tmp/tmpkxb53qt9/src.linux-x86_64-3.6
compile options: '-I. -I/tmp/tmpkxb53qt9/src.linux-x86_64-3.6 -I/usr/local/lib/python3.6/dist-packages/numpy/core/include -I/usr/include/python3.6m -c'
x86_64-linux-gnu-gcc: /tmp/tmpkxb53qt9/src.linux-x86_64-3.6/curvif_simplifiedmodule.c
x86_64-linux-gnu-gcc: /tmp/tmpkxb53qt9/src.linux-x86_64-3.6/fortranobject.c
In file included from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/tmpkxb53qt9/src.linux-x86_64-3.6/fortranobject.h:13,
from /tmp/tmpkxb53qt9/src.linux-x86_64-3.6/curvif_simplifiedmodule.c:16:
/usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
In file included from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/tmpkxb53qt9/src.linux-x86_64-3.6/fortranobject.h:13,
from /tmp/tmpkxb53qt9/src.linux-x86_64-3.6/fortranobject.c:2:
/usr/local/lib/python3.6/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
/tmp/tmpkxb53qt9/src.linux-x86_64-3.6/curvif_simplifiedmodule.c: In function 'cb_obj_func_in___user__routines':
/tmp/tmpkxb53qt9/src.linux-x86_64-3.6/curvif_simplifiedmodule.c:361:10: warning: unused variable 'f' [-Wunused-variable]
double f=(*f_cb_capi);
^
At top level:
/tmp/tmpkxb53qt9/src.linux-x86_64-3.6/curvif_simplifiedmodule.c:128:12: warning: 'f2py_size' defined but not used [-Wunused-function]
static int f2py_size(PyArrayObject* var, ...)
^~~~~~~~~
compiling Fortran sources
Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
compile options: '-I. -I/tmp/tmpkxb53qt9/src.linux-x86_64-3.6 -I/usr/local/lib/python3.6/dist-packages/numpy/core/include -I/usr/include/python3.6m -c'
gfortran:f90: Curvif_simplified.f90
/usr/bin/gfortran -Wall -g -Wall -g -shared /tmp/tmpkxb53qt9/tmp/tmpkxb53qt9/src.linux-x86_64-3.6/curvif_simplifiedmodule.o /tmp/tmpkxb53qt9/tmp/tmpkxb53qt9/src.linux-x86_64-3.6/fortranobject.o /tmp/tmpkxb53qt9/Curvif_simplified.o Curvif.o Rutf.o Rut.o -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7 -lgfortran -o ./curvif_simplified.cpython-36m-x86_64-linux-gnu.so
Removing build directory /tmp/tmpkxb53qt9
CURVI files compiled.
Generated CURVIF python binary.
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